Scaffold Ga0335036_0007655

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0007655
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9022
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (88.46%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029046	Metagenome	189	Y
F066470	Metagenome	126	Y
F075715	Metagenome	118	N
F093236	Metagenome	106	Y
F093237	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0007655_4878_5060	F093237	GAGG	MPYKYDLGNTRDMSSQELLDALLAREIAPRTIVGTGYKNGRQVAIDYLRERIAKESEGKE
Ga0335036_0007655_5194_5367	F029046	GAGG	MQLQEIDTLQDLKLWVEENMAGAEVYEDMYGTLVIRTNLISTMGGYLHPIEREDEKE
Ga0335036_0007655_6392_6559	F075715	GGAG	MNKEYLAAKADLCKDLAIEQLTNGDSEEGVKNLKRMIRALEEINLINYLEERRGR
Ga0335036_0007655_7079_7378	F066470	GGAGG	MTEIARRIESAKRSAVVYRNYRRARDRAMTRLSNAYPETYKELLEQEKIVDEQMGKKWLDIDGSTGQSMDLDSSTPPTGGGESEQASSGPDKGNDGGEA
Ga0335036_0007655_7423_7665	F093236	GAG	MGSKEVVPSPYGPVRAGLTTSPITQDQRLSELLSSLESVVENLNYKSFTLYDMLNTAIEEISALLSSTQTEEDGIDADGS