Scaffold Ga0335036_0006955

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0006955
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9480
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018511	Metagenome / Metatranscriptome	234	N
F060725	Metagenome	132	N
F090088	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0006955_3216_3467	F018511	N/A	MKGNSIWGELASRIPQEYKEQVMATVDRTYRVLSIDPSDMDYLFQIYNNFVNHYEPERRNCPACRTKVVGKMRQIVQFWRDEQ
Ga0335036_0006955_6512_6727	F090088	AGG	MEDKQALGKKVFLEFYSSFILDDEIEKTGRVFYLAQKASMIHLNLIRGVLQNDEYIINMAYLKDVINKIKI
Ga0335036_0006955_6727_9162	F060725	N/A	MIKLFIGGQEVDLNQNEVNVTIDYSIENIELGNISGAHSKRNVTLPATKTNVNIFQNITDAGAIVTNAYKLLSARLEADGVPILTGKARLEGADLQAINSGFVASNFKVSLIGNNADWFSDVGNILVRDLGWSTIEVSETTVKASYNPVTAEYCFILMKWKAWENETYILYNELSPAIFIWQILEKAFANKGYQLNSIFKTDPFNRLIIPMGLNLDADYIKDFVNLRASNPTPSSFVYSAGDYGTVDIAFTDETTSPNFDTGGNYTGGVYTAPISALYDIAAELNVTLTASIGDINQFAELILFFEVNGNNVSTYDLTNETSLNDSILLEFLGDLVATDTVKLRLRYENVTFNLSIAGSLSVVAEKEGLETGETVNIQYIIPISWYVRDIIADLTTVFNLAWETDVLNRQVYAYPKDDYTIRYRANSTGAASLTSFDGFFKGSNKYDLNTRDIDGSDFQVLDGYKSSQVLAYATDDDTTNKEEERRGVNIYSGGYNFPQDRFENGIEFIYTKFFAKAIHINDVEITSGGTYGAQMPLVFGDDYNTVTDAEPNYNLAPRLLYYAGRRGGLDGYVRLFDETSSAASAFDFPAAFMVNYNDPSGADFNLSFSDEVTNYTNVMQGVFKTFHLQTYKRIELGKVYTTFAKWKPKDITQLSFRRKGIIGSSNFIIQSLEYNPKSNSPAKTVLLYDEKPNTNDLTKVVNTITLAGASPQSGTVTGSGSGLVGANGATVNIQLSYTPFLNSMTNVLVLAPNSGITQVSNTNANVLVFMNGQKLIPTVQYIIGGSTIGINIDTHYDGANYEVVVNGVTKG