Scaffold Ga0335036_0006561

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0006561
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9800
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (34.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003331	Metagenome / Metatranscriptome	493	Y
F009072	Metagenome / Metatranscriptome	323	Y
F010017	Metagenome / Metatranscriptome	309	Y
F055547	Metagenome / Metatranscriptome	138	Y
F100423	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0006561_1157_1348	F010017	AGG	MNHRKYKQSENQKKRRMYTPEGYLKDPPDAECPHCGEKQKSCSYVNSLARAWARSACKKKNQN
Ga0335036_0006561_1598_1921	F100423	N/A	MTLPQQEHNSLLATREFLKLLLDKVKYPDLPEKVRLSAKSLLEHYPERSKIDQLYFGNTFSDVIPFNESDITEEEMENNNKILNDNQTWETPGLKWKTEVEFVSVES
Ga0335036_0006561_4088_4264	F003331	N/A	MALSEKAKIYYNVWCCAYRRRYNAKIKGDWNLYNREHETILMCLKMKGARWNKWSGEK
Ga0335036_0006561_7778_7993	F055547	AGTAGG	MIATNWFQRKWGLEDPVLIDELYSRIVDLEQRVRVLEEENVETTNELYRLENSLDARIDIIAERCRIDYDV
Ga0335036_0006561_855_1160	F009072	AGGA	MKKYNEEYFSVLNKKTGKKLLDCGEESDALAMVALDPQNRTYTRNKFLMGPVVDIEIPKALPTNAIDVSSYKEHQENWMVEKLNELPQIKLPEGQGQPVVV