Scaffold Ga0335036_0006054

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0006054
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10199
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (25.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003786	Metagenome / Metatranscriptome	468	N
F009808	Metagenome	312	N
F035763	Metagenome / Metatranscriptome	171	N
F038230	Metagenome	166	N
F041020	Metagenome / Metatranscriptome	160	Y
F054865	Metagenome / Metatranscriptome	139	N
F090393	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0006054_1499_1690	F054865	N/A	MEVKTKRFIIKYREGIVSVAANDVAEAIERFKELRIETTAKELTIMPADEMHKRREELFKRSD
Ga0335036_0006054_489_1223	F009808	N/A	MLQFGRFAVVFIDFLNPSDKRSKYPPRVAAAATVIALLELWFSIQGQSTGAEFYAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGIKEPKTRRRRLVKETTTTNITSTQPIKFTMAVCFMLTVAYLPAQNNHFFAYNTMSLEKIDKGLLERRYYSEADESYTVDTITYDMLSGINLWDGYSRTTYDNTMFMTYGTQNFEYYPVAGLWKYKNKYYDYIELLKFVSKYFKRNFLNKKITYGKIRRH
Ga0335036_0006054_4962_5210	F090393	N/A	MALDRKTPFNVSFYDHEEQKIQNWAFKGSSRLALLVYTITSQKDKIEANNINKEEEIKKALDYIIHDLKKFIETPYTTEDNV
Ga0335036_0006054_8455_9102	F003786	N/A	MEQKDAYKQTLNVISSVFPMYGIDGDLAFYANIAKEIVKTFGQIATNEIEIAFRMFSAETLELDDNVKFYGKANMHTIGKILNGYMTYRRKIIASHDNEVAALRHQVQMEERGKAEREKLYAEFPTMIKEFTGKTWEDVPLYWYDMCLKFDMITYEEGEKRALWDEAQAIALKEPPESLDLLTIRSHAKKIEQGNMKRAVVIAQKLAVWRKVIKK
Ga0335036_0006054_9176_9385	F038230	GGA	MQCKQDRNAYMREYMKKYRATMNEYTYKKIRERENLRHRAKYHAMTDDERQKYIEYQRSYHKLKQFTNE
Ga0335036_0006054_9375_9614	F041020	N/A	MKQTPKEKAKELFDHYYILIQEIGGELGQEILVSILAEQCALFFASQMQQEKWDEKKYKAHGYWEEVEVEIVNIGMYAM
Ga0335036_0006054_9611_10198	F035763	N/A	KIPNREKSTVTNKDFEQRKNNTNKDFNKGCEFENPLPKTKIKNPFSRQAYHDSLNTDSDPKENFAKKEKVKEREPSETYLCFTAFASTYERLAGVTYPSDKNNYIMTAKDGANCKKLVSWLKKVSASEQAPDEMVRMFTTAAWQISDKWLKANFTISNIYSQANNIYTKFMYNNPAAQEKRRQEEIERLVNEFQP