NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0004945

Scaffold Ga0335036_0004945


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0004945 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11341
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (19.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011074Metagenome295N
F019816Metagenome227Y
F020651Metagenome / Metatranscriptome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0004945_10012_10251F019816N/AMRELLPFERQMLLAEVYHYAWYNEEAYKDLLLFIEKYQTILEKPVFLTPINNNDTETTNLEPLAYGQDLDTNSGFNEVQ
Ga0335036_0004945_4571_5254F020651N/AMNVAILLLTQNRHDLTQRVINQNFYNSGYNADCFLIDNGSDTHENFNYPFAGYDLSKEKRGIAAGVNAGLRITQNYDAVCLLANDILLPENWLSKWVMFSQRVSKTGIIGIHCVEELPPIVDGVHKTHTPFGDNFITRELIDAVGGYNEEYDPYGMQDRDYGERATITGFTNYYLPDMRSEHIGHDVGNGTDYRRMKDESLARAQSVWDKYQDIYHNQKNIRCEYFV
Ga0335036_0004945_7580_8161F011074N/AMQLVGINNPGEVKLAILEDWIRTEYGGFTINEVKIAFKQMVANDFIDHYQNFSPAYFSQVMDRYKKKANEVRKMIPQEREQAIPHLTDLEIIDYSYQEYKVLENRTFDRLFNPLSVFTKLHNSGIKTWSKEDGALAKKKLMEIITYKANKMDIISAKQYRDEWTEQWLKNQARAVAVALFFEEQIKLGKVSFS
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