Scaffold Ga0335036_0003844

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0003844
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12859
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012570	Metagenome	279	Y
F019121	Metagenome	231	Y
F028501	Metagenome / Metatranscriptome	191	Y
F095133	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0003844_10122_10400	F012570	GGAGG	MQTIIVDGTTYKVKFDRDPIELAKAARKPYKPKKPKDIRKFPFWTESVSTAEYIRRFDALNFLQPVQYAGASAETAAQYDPTIPLCEVFNDD
Ga0335036_0003844_10601_10753	F019121	GGAGG	MAYTLKRSINGLTHDDIRRIYDQNPNLTLKELSNLTGYAIPYLKKILTEG
Ga0335036_0003844_10774_11001	F028501	AGGCGG	MKTITAKYDGFCAATGARILPGDVIQWQRGRSVLLERRTARIDTVTLIGEHGPRDYYRNARGRCIDAPCCGCCTI
Ga0335036_0003844_9863_10132	F095133	GAGG	MMTNTATAAGSSGRPYPHYLERVDVLLDDTWWSIWVDFEPADPGVGLPATAWLVHAHVAEHYADIADYLSESTIKRLETEAADYLSGGR