Scaffold Ga0335036_0003792

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0003792
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12963
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (92.59%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010232	Metagenome / Metatranscriptome	306	Y
F015719	Metagenome / Metatranscriptome	252	Y
F022871	Metagenome	212	Y
F038155	Metagenome	166	Y
F054561	Metagenome	139	Y
F056557	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0003792_11658_11969	F022871	AGGAG	MSEFENAWATDEDFWEFVGDNRKLVGIAISNGQGLDILNALKDIYTTIEKEPESAMRMLTLLGTVIYASSIGEGKQFTDEIQVVSAMEQFDSSIKEMLDEESK
Ga0335036_0003792_3414_3845	F054561	AGGAG	MNNEIIVQNQLTLMNECFHCQELNELCADCLDAKEARDAVIANQLVDDEIYEHAMAKIQDEPSAHDWISSEVIVREEKPTLSNWDRTQGESIYTMRTEFFEQSSWLIDRLFDLDESMEVTKHECICSVCHYTINKHAVCPNCN
Ga0335036_0003792_4340_4471	F038155	GGAG	MASNDRKNGKAYKKKPKVQKKTGRTIGGYSLSKLAIRAKKRGM
Ga0335036_0003792_4471_4626	F056557	GAGG	MYLDTSTMIGIIIALAASMLTIGYSIYIIKTQNEIIQRMSDARATQRKMER
Ga0335036_0003792_4633_4797	F010232	AGG	MRTEQELLKIKEAFALATMDMLDVFDELLATGRLYVNDEPTINDLAKNQDESNA
Ga0335036_0003792_7897_8343	F015719	AGGAG	MYYTEVDGTEPTVSTQVGGIKYTFTNESLTKLIEEKEQLKIELAQLERKFRSARFDVREFFQSRYETDSDEIVCEVDDVNNLLINLETETLTRSWSATVTITATVTGIEAPNAEAAQEILDDAFEVNLTVDGDVWVDDVSVESVHAES