Scaffold Ga0335036

Basic Information
Taxon OID	3300034106 Open in IMG/M
Scaffold ID	Ga0335036_0003620 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034106 Open in IMG/M

Scaffold ID

Ga0335036_0003620 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13267
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (66.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13267

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (66.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023321	Metagenome / Metatranscriptome	210	Y
F024533	Metagenome	205	Y
F045622	Metagenome / Metatranscriptome	152	Y
F053899	Metagenome	140	Y
F057311	Metagenome / Metatranscriptome	136	Y
F091391	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0003620_10070_10339	F045622	AGG	VKQLLEMLPKLLESMPELVKYIKYIPILMILAGIGYGVYYAAQRYKDPYLCYNNQLYAQKSIDSNVYIFIGDVCVSGNENENQPPVTEN
Ga0335036_0003620_3314_3565	F023321	GGAG	MFFTQAPQFPTFYSWNDIQRKAEDATIKTIDFNKVLVDHTIAYFDSVTENTFTTYTKKVVNLNKNIAEDAKKIIKSEIKETKA
Ga0335036_0003620_3519_3779	F057311	N/A	MQKKSSNPKSKKLRLDIEGKTKFWQPVVRNGWWIKFSTYRDHYILLMIISKYTGQTILRYYENESEAVAFINFITTCRAQDIFQSA
Ga0335036_0003620_4386_4700	F024533	AGAAG	MPAEKTCPRCGVTHNKRGPYCSRSCGNVREHTEEDKAIRAAKLTEYHLTPEGAATREKSSRIMSAKRKGEDWEEVGVEDFAVNIPDVTDYVADYDDTWQRAEKW
Ga0335036_0003620_4873_5043	F091391	N/A	MAEIYTFTPKQKSKSDNTELERLRAKLLELHEVRDTLNKEIRFTKDAINLLEKGEK
Ga0335036_0003620_6287_6475	F053899	N/A	MKRIQNLDEYEVQVTIPDEFQFDGPVPFDMEIAGDIAWVKVIAESMEEAKFKANEYFESKYK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335036_0003620

Overview

Ecosystem & Geography

Associated Families

Sequences