Scaffold Ga0335036_0003520

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0003520
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13443
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F018919	Metagenome / Metatranscriptome	232	Y
F034542	Metagenome	174	Y
F099215	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0003520_3812_4675	F018919	AGGAGG	MAINPQQIAVSKIYPGNYTNVLRYWHSTSSFSFLNENGTNETYSNQPIGGPVGVVFRPGWIAQQAVGYVDLSYQGSSSTNQLDYYTQPWASGQNSTNQPFKAGDVIIPSPDAYKDVRADITDGITVPSGAYVYRVSVRLDGGDVISSGIAGAQTAPALGVGPALSSGLTTAPSPSGFFANLVGSNSRIENGSFTSSNAWNAANMHVVTADTKYRLYSTATVPGSGLGLGSGVYDPRAQANKLSGKNKALGICEVCWLVPDEAPKRDDLALQPAGLVESSVYTSTVPQ
Ga0335036_0003520_853_1602	F099215	AGG	VVYAPLSNYKYDDGYHRIQSGPVHPTYIVVSSGIQDTGADYGIVTPGPPNSGVYTTTAWRQVPQAVSGYWVDYENNDYLPSGSLSAYTGYRSLYTTTIANAKVVTSTGPEFGIRNAGTYRYYNGIAPSNQAYTPYDTPASNTSAEGRTGGGVTHRSYEGSLLINVLGSQGTADRSQWRYQPPVYCQTFTETVRSETPGLMSTALRFVYRGKSTRYAYNYGSVYYQAPEGVRSMVRVFSPTVNSSNQKSV
Ga0335036_0003520_9087_9641	F001215	AGG	MASTSTNKQPCLVDRPFLRGARITSATQTCDPTNPNLTDLIQLVRVGDLPSEDAALVEDITIISNEDYPNNGGNRTADIGLYVYAPNQSAPSTSSALMVGRFEVGLSGDTFGYPLPVQLFAINAPVPQVGDTAIIAPIQVGKGEGLYLEKGYILCAGYIGNGPTSVSGGLSPSGITIWAQGGFY
Ga0335036_0003520_9651_11183	F034542	N/A	MSRRKGSDNFNFKSFKGSEPVKDFSKVFGTDNKAQLLQPLPFKRRFRPATGTKDFSVQSDYDYASLWVRWRRGYELAMYSQQAYDGLVYSFKYYLTGSPPFGVFLPGIAFMYPSTRADMRMWMVGIRPRDSFKFIDFGYAVESVTDYDATTYAVRINTRFGAPVSFFKGEVLSNRYNPDGTEKAYGFNNYTVTGVGINGVPVNPSYLPIFNTLFLSHSDANSWAVVDANTMAVPATGPPAVGEYLATEMRSQCTCPDFLAREGFNLYDATIRRKYPFTRVQNLDPGFYDAGPDLADRLIPASDAPGFARSFGFIYLNEIYNIPRVSESSYSDPNVYYYQPRWCKHIYAAMWDLQLRYNQTETTSPWLPQPTDEPLNEYYREKFEIDLSKQTDFYRRERNLVWWQRYSPTKDDMPTHMMYPDMYNMMSKSLNAGGLDSASTLQASNFEMYTISEFNPFAPITPSQQQVYDGGTYANGVLVSQPTNTFIGGTYANGVLTAPDGFPINGGTYT