Scaffold Ga0335036_0002864

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0002864
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14986
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (44.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F005740	Metagenome / Metatranscriptome	391	N
F006135	Metagenome / Metatranscriptome	380	N
F094883	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0002864_11409_11921	F006135	N/A	MSTHIKIENQTEVPVLVALFEQPKCNDHPTRSAVLKPGESCDWGSGSVPLGNYQCYAVMSGDASSHDEWVWHFPGIAEVVAPLELGFKLWHAGDIDWANVKAMSSDDLNATFGSAYTSAKSNTKSWNGMSSCIFHIRGGPSWVEETEQVGIFRPKTIAYNGVQSTPMKSE
Ga0335036_0002864_12648_12848	F001259	AGGAGG	VKDSPAFIYVHAFNGIVRVESLDTAKHIDGNPEWKHVSTVNPYVALEQILRAKGKDRNLIIKHLLT
Ga0335036_0002864_3_953	F005740	N/A	RSTIARVVGVCVDDPRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRHIETIESVADCCGVGTVRNQWFEFQESGYGLLGENNGGCVGKQLVDRGTVVSYRDMSGETNSFIRVYPGDASDVGKTITLQGVDQNGQWIRTLSGGVWIDGEKLTLALPYVQSTKKFISLTGVIRQATNTVSRLYEYNATTLLELDLAVYDPDETLPQYRRSYLTDRCNNDEDKPVTVMAKMRHINATSVNDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0335036_0002864_971_1849	F094883	N/A	MAIGLGAAILGGAGISAAGSLLGGLFGGKKPKVPELKPIDFAGEQRQAIQQNIASLESATDLATKTTAAEQSQLEAQLRRAIPGYDQLIAQAGKTIGSRLRGEVDQDVQSQLQRAVAGRAVGGGFKESEGIRTNLLARDFGLTAMQIQNQGLAQAQSFIQQQRTMGMAQPFSISSMFITPAQRIGAIQQQQSAMYGRDLTAAQVAAAPSPMQQSAQTAFTNFGGIAGGALSQYGMYQGLMQQQPGAYRPQSYNPQNDSEIYPNLYAPTPTRSDITPLSTSLFPEYGSSNYRP