NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0002199

Scaffold Ga0335036_0002199


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0002199 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17076
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (10.34%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004839Metagenome / Metatranscriptome421N
F014956Metagenome / Metatranscriptome258Y
F021732Metagenome / Metatranscriptome217Y
F031483Metagenome182N
F041648Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0002199_10909_11457F004839N/AMEKNFTNTQFKWTFENISDNIPTIMLLTIILTYGINAYLTAIFLPIDFWLAIIAASILQLGRFAVVFMDFLNPTKGRSTYPPKIALGATLVALVEIFFGLQEQYEGGEFITMFLFVGTIVVFGYLLEINFVDKGVEAYGINVPEPKPKRKRKPRVKVEAKENNETTGTTAKNFVSSFKTITL
Ga0335036_0002199_5015_5284F021732N/AMNITKYTCKCTLDKKLGHFVHVTFSHGFGLYGQTSPHSPEDNMEIHGWTFEPEEIDPECRLYPPITRYNLMPLVAENEMDWVILNNQSL
Ga0335036_0002199_5298_5648F041648N/AMEALKTTLTDNALTRYYEERIVYLEGENERLRNEARADFWIVLDFWIYSQRMIQAYVSWHKEAMHDHYLDCIKTMLQTLEAHETRVLDTGINKLRIGVIEECKEAITKCIQITAAR
Ga0335036_0002199_5645_5899F014956N/AMINIQDFALNASLTICPDHIVEPLHLKKWWRQRGVGELEKYFYTGNKISYAQEIDWKAISDHKKQMWYDSQNFQIQAGNEYSKR
Ga0335036_0002199_5880_6338F031483AGCAGMNILKGKVKYTAGKVFEGQYGPSINAVITLDNGTEARVYGKADDEKLKALKKDDAVTVIHDGKSYKVAFDMVTANEIPEKVQTPTEGANVQQAANVPPKSNGKMTLDEITEKATLMTSVYADIFHQLQASGLEPAQAQPAAATIFIQIGKYF

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