Scaffold Ga0335036_0002199

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0002199
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17076
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (10.34%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004839	Metagenome / Metatranscriptome	421	N
F014956	Metagenome / Metatranscriptome	258	Y
F021732	Metagenome / Metatranscriptome	217	Y
F031483	Metagenome	182	N
F041648	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0002199_10909_11457	F004839	N/A	MEKNFTNTQFKWTFENISDNIPTIMLLTIILTYGINAYLTAIFLPIDFWLAIIAASILQLGRFAVVFMDFLNPTKGRSTYPPKIALGATLVALVEIFFGLQEQYEGGEFITMFLFVGTIVVFGYLLEINFVDKGVEAYGINVPEPKPKRKRKPRVKVEAKENNETTGTTAKNFVSSFKTITL
Ga0335036_0002199_5015_5284	F021732	N/A	MNITKYTCKCTLDKKLGHFVHVTFSHGFGLYGQTSPHSPEDNMEIHGWTFEPEEIDPECRLYPPITRYNLMPLVAENEMDWVILNNQSL
Ga0335036_0002199_5298_5648	F041648	N/A	MEALKTTLTDNALTRYYEERIVYLEGENERLRNEARADFWIVLDFWIYSQRMIQAYVSWHKEAMHDHYLDCIKTMLQTLEAHETRVLDTGINKLRIGVIEECKEAITKCIQITAAR
Ga0335036_0002199_5645_5899	F014956	N/A	MINIQDFALNASLTICPDHIVEPLHLKKWWRQRGVGELEKYFYTGNKISYAQEIDWKAISDHKKQMWYDSQNFQIQAGNEYSKR
Ga0335036_0002199_5880_6338	F031483	AGCAG	MNILKGKVKYTAGKVFEGQYGPSINAVITLDNGTEARVYGKADDEKLKALKKDDAVTVIHDGKSYKVAFDMVTANEIPEKVQTPTEGANVQQAANVPPKSNGKMTLDEITEKATLMTSVYADIFHQLQASGLEPAQAQPAAATIFIQIGKYF