NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0002190

Scaffold Ga0335036_0002190


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0002190 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17114
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (36.17%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005382Metagenome / Metatranscriptome402Y
F091611Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0002190_12474_12752F005382N/AMTKTDKIKSFIFNAGSSIVNVRFVKADGSVRSLCFNPRDTKEIKGTGVATKKLSIIRCRDFTIARTAGEGAWRSFDCERVLSIKANGQTLVF
Ga0335036_0002190_14295_14573F005382N/AMDKTALIKQFIFNAGSSIVSVQFIKADGSVRSLQFNPRDSKEIKGTGTAIKKPSIVRCRDFSIARSVGEGAWRSFDCERVFSVKANGQSISF
Ga0335036_0002190_16920_17114F091611AGGAMPYSLIVDDEWGVPYALKTFETIQEVHDEIRTMDEALDNVGPGSAYAIRCIIDQLKEIVHEAEEE
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