Scaffold Ga0335036

Basic Information
Taxon OID	3300034106 Open in IMG/M
Scaffold ID	Ga0335036_0002026 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034106 Open in IMG/M

Scaffold ID

Ga0335036_0002026 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17890
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (85.19%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

17890

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (85.19%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017452	Metagenome	240	Y
F035193	Metagenome	172	N
F042160	Metagenome	158	Y
F064395	Metagenome	128	Y
F071972	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0002026_2162_3127	F042160	AGGAG	MINRYFLDGFGTEEQLNELLASDTLPLVRELQFKYGLKVMDKVMNVGYPQEDKDSYMMCYPNGLAVCKVWTTNLGGANFDQLEYCFRTPYYSKSRGSDQADRETIRSTKLSSLMAVLKRQDAVRAKKDIMDKEIKHVKNGVSNLRRAMGDSQKQNMFSADELHVLLATLLGESTDGIPVALDLNKCKNTLDIFKENDRIRDMKIEESNRFFKNPFYLIGIDDYKHLIIGKFKMKVINDALGKMEYEVIEDFKRVRTIEEYPELVPLMTMMKVSYENKECRKLGTLNFPLLDKYDEGLDAVFFYSGSPTNYEHAWMATPCPT
Ga0335036_0002026_3115_3474	F035193	GGA	MPHLIGELSPVVHPKHWELIRLPVRKVNDEYIVYVADGFHRIYNDDTLPDVLKSKFAMILANGGSSNVPDSKILRLTLYTNTDSPELDEVGWRASDTYFCLVVDRLTLESLKGGIQNDA
Ga0335036_0002026_3745_3960	F064395	GGAG	MNDEDRSNLRDLHAGFALVGLIFRQGGSDPTFLAEQAYDIADAMQNERDQHGVGIVSIKRQTKKEKANETQ
Ga0335036_0002026_7576_7800	F071972	AGGA	MDKPIAWYDPSNGMVSTDQDCPLFTPLGQVWGLYPEREWVGLTKEERHKISMDNRPYCADIMVAHEEELKRRNT
Ga0335036_0002026_7797_8006	F017452	GGAG	MIHTDEDDEFERIAHEAEMKKGQPYHYDVYVSPSQRNTVLEEVAKEFDKMKALGDTAASFAAFVRGMKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335036_0002026

Overview

Ecosystem & Geography

Associated Families

Sequences