Scaffold Ga0335036_0001717

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0001717
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19440
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (29.03%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039944	Metagenome	162	Y
F046179	Metagenome	151	Y
F056323	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0001717_2366_2575	F056323	N/A	MIRLFSLHEMADDLKLPPAVVALWAADGYIPHVMREGMPLFDPIAVGKHIAKQLNELNKIDDGNKPTTN
Ga0335036_0001717_3584_3892	F046179	AGGGGG	MSRPQWENNALLAIMRDGVSTDDAPWVLECIQKAAEDIAEMDDADQFPLLMEYHANDKAALCNIDAETFADVLACLGIDLHRLETLWGRKRIDPPVDDWSME
Ga0335036_0001717_4615_4758	F039944	N/A	MKLSNLFLALALVLCLALAIAVTSGAFGGPSDIETRVRASEPLNLQK