Scaffold Ga0335036_0001694

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0001694
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19579
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (70.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F007467	Metagenome / Metatranscriptome	350	Y
F025460	Metagenome	201	N
F030376	Metagenome / Metatranscriptome	185	N
F035218	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0001694_10801_11517	F025460	AGGAG	MAVLDIPAMMDMFRQDELQKQAVAEAQRKQAMEERAMAIKEQPDVDFSFEKGGLKVKGKLKDLPALSQDPAFAPYLAGIGSTITNEQSLENEEVQAQRESINDRLRKLSAERLKQELEIAKGDTRTGAMELGLGLVGMKKRSDVMKELEAERGVLQGRMAELGFNRQTGQMETETPEGAPTAIAPSAPAIAAPTIEQQPAQSQTPKNFNSLQEARAAGVKPGELIYINGKPGRLQARQ
Ga0335036_0001694_15944_16309	F030376	GAG	MKAITMITLTAMLMASVMAEDDDADAADFVGAVLKRNGFSCGRGCVISEDGGMAYSSSSGRSIISTDGFYYKSGSSVVGKDETFISKSKNFFYGTSTTIKAGSAYMNEGAVWVESQEEDN
Ga0335036_0001694_16728_16907	F007467	N/A	VNEKEAWAKFEAGLKDMESFDEAVAWVKKNKKIVEKLTMMAMIRRFNEDISKANKTWRN
Ga0335036_0001694_2668_3438	F035218	AGGA	MPLVKNPSNIDNFLFSTGRTRAFRVGNAGSYFKSAGVGATATGGNTLGFNLSINAGSAAAGTAKVGYFDPTAALMTASAGKIDYSKRIRFSIGGMMYIGSTNSVIRIVFGGTGNSVDAPAAGANGLTIKGFGAEFALQSGVIQARLIGFDSAYLTPTSYTTLTNGFGLVASDNRFFGVVIESDGAGNIYLYGADSSINPNINIGQSPLLTLTGGPTNDTSTNRFGPEIQCSNNASVAPTASPSAILQSTYYLIDVQ
Ga0335036_0001694_5612_6310	F000635	AGGA	MTLTEIAQYAGEKIGKTDADTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTSRTITLGTNVETPLSVAYNDAEVDPIDLATIVSQDPGLLSDDRTGDPDTYHFTGRNSSGVAQLDLYPRLATSGTIPLRVIEKLKCLTRTNYIVDFPPSNDALGDELRLPHVHHLVLALTHADALERERQYTKAQVITQGANSDLAAMANYELSQVGGVKQITPQSLGELTIEEMFSA