Scaffold Ga0335036_0001056

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0001056
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24878
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (16.67%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F001120	Metagenome / Metatranscriptome	772	Y
F002333	Metagenome	569	Y
F022401	Metagenome	214	Y
F025487	Metagenome	201	Y
F025982	Metagenome / Metatranscriptome	199	Y
F056537	Metagenome	137	Y
F058089	Metagenome	135	Y
F067537	Metagenome / Metatranscriptome	125	N
F087066	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0001056_10219_10473	F058089	N/A	MSTQPEDQFTLLYEDGKRKVLHEFQCIGTDEIVDEFINFMRGVGHLELNIIERMHEISSQYLELYNSNKEMFLELQQEELKIIE
Ga0335036_0001056_15156_15371	F056537	GAG	MVNDIVYINRHILSVSIDTKAMTLTYRGCKYNQEDQAKTDKAWWNLAHRPWLCLTYRNICYFPYVTGGQLK
Ga0335036_0001056_17360_17569	F087066	N/A	MTENQIQFYRGCFTTILAFAGTGLIAAIFLLPDEPKNNTKFEVIDQYEGCSVIRYTDHTSRWHYFLKCS
Ga0335036_0001056_17571_17870	F067537	N/A	MTTKRQFDYKIGDRVAERPKPHGIYTNNQQTKERISQYRSQRYGEVVGINYKNNSRGATQKFLLVRWDHLPSPTEHATARICPVSALERLTKEVLVPGE
Ga0335036_0001056_18545_18862	F025487	GGGGG	MTHDTIDLDLVDKTIALIPGHAWTQVRQAIVTALVDNMPGSVIQHLTGSYDNFDRAEEILYDYYELPALSHELIADAFKIMGEVNCFELLHSLNLTEDELQTMQQ
Ga0335036_0001056_22312_22506	F001120	N/A	MKKSYVSFDKTIAGFNVTERGVRSYSKSIKLGPLQVTLNARESGVRGTISIPGTGLSLPNIKLI
Ga0335036_0001056_4312_4674	F022401	N/A	MDSTEEPVDTIKRWQEWYRSHRIIAEINKPMTTKDSNENMHDTSNAVETLSDTNPKAMWIEKAREHFADTLAEYQYELSGKDFYKAFYQAATEAMGYAEKEYQRTKELVDMLRYHHLSQD
Ga0335036_0001056_5537_5761	F025982	N/A	MSCHDHAIKDFDLQLEMNGLQMEMLMEEGKVLDYHMSEYEDLEQKKLKLLVGKRFHQNAANAYWYWTQREKTGK
Ga0335036_0001056_5784_6497	F001018	N/A	MSQITQAKLKDLSVIKLYEHYAALEKSLPLLTPESQELAKAELESCADLRSEKIDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKGLLNYLRRVLPQDTNKITGRNYQFTLVKKKELTVEVSTDPEFWHSKERELYCVTEEVTTTKRVVLRSMSGEILDERIEPKTTTKVLPNLDAIRSAYQKGQQLPSGVKVQQEYSVRSKRIFSEPRLDLVSSEYPREFLSEDSSAD
Ga0335036_0001056_7680_8624	F002333	N/A	MSTQLQQQELNAAQSLIYTRTNISRAFQDFDDTEIAGIYLRDDNCLVVRRDGSEQTYPRELIKLAFTNYTHRLKDFFSYLGPNYRGPSVWHNNAYVLFKGWNYTHALGHLTSNAKLQAHWADKFIHVSDIAKITAILQSDQTDIGHLVAPDGMRLTDRPIDMDSELDDGTKQDSMFGEPTCSCGSFQRQLSNLSSFQEEIEGFRPWCIHLSWFNKYRELLCKRTDARNASPSGTPEKCVAWFYAPPKDSISDGRFVLLYTNQGAQAPLSHWRNYKPNEVFTQHHAWDLFFNMMDASYVPFPGIALPQLKAAIKK