NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0000891

Scaffold Ga0335036_0000891


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0000891 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27226
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (76.19%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025215Metagenome202Y
F025224Metagenome / Metatranscriptome202Y
F043220Metagenome156Y
F046858Metagenome / Metatranscriptome150Y
F073073Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0000891_10846_11088F073073GGAGMTGEVTVSELMGKYMISTDGKTSTGFTKSIILNDGTNQYSGRLHWDSNDGYSMGWDTQQPPEADRPEFEYILDCITDLED
Ga0335036_0000891_11078_11323F025215N/AMTRKDSMKLKVHSPSGDVIAEVYDWPAGALLMSLYGDGSHISYRGKVLWREGKDGEGAESYDTTSMTIDSRLIEMGVQLDG
Ga0335036_0000891_13516_13737F043220GAGMSKSNVDYANEIILTLTRDELETVRESLRQFSIHNTRQGFEARAKYADDLRDKIVNVILDSVQRRVDKAKELA
Ga0335036_0000891_13851_13979F046858AGGMYIEITDTIAIIIALTTSTTLVITTAIRNAKLTRALRELNAK
Ga0335036_0000891_20960_21175F025224N/AMSNVTWLPGSIFDNIDKFSNSLGYQNAGIAIQLALQPWDSPSERDAFIRAVTGDDVQGGTEKMYPIRDLRR
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