NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0000737

Scaffold Ga0335036_0000737


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0000737 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29901
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (87.04%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000346Metagenome / Metatranscriptome1253Y
F016377Metagenome247Y
F054805Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0000737_14808_15011F054805AGGTGGMTYERQMLEHLNKRLLEREESVKDSLVGSGAKDFAEYKNLCGVIQGLRLAKMEIQDLVQRYEEFENE
Ga0335036_0000737_22751_22927F000346AGGAGMMDKKDLAQDKKMVAGAVHKHERAKHKGQPLTKLKKGGPTGMDMRKMGRNLARARNQG
Ga0335036_0000737_426_611F016377GGAMSPDYKFAMLAAWLEGYAEGLPDYCTAEKFKIKEAAELLMEVYEQRMKEKETWKMNVSDQ

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