Scaffold Ga0335036_0000624

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0000624
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32471
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (13.04%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018511	Metagenome / Metatranscriptome	234	N
F021732	Metagenome / Metatranscriptome	217	Y
F031407	Metagenome / Metatranscriptome	182	N
F034112	Metagenome / Metatranscriptome	175	N
F060725	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0000624_18440_18694	F018511	N/A	MKVDSIWGELASRIPDEYKTQVMATVDRTYRVLSIDPSDMDYLFQIYNNFVNHYEPERRNCPACRTKVVGKMRQIVQFWRDGNQ
Ga0335036_0000624_22159_24594	F060725	N/A	MIKLFIGGQEVDLNQDEVNVTIDYSIENIELGNISGAHSKRNVTLPATKTNVNIFQNITDAGAIVTNAYKLLSARLEADGVPILTGKARLEGADLQAINSGFVASNFKVSLIGNNADWFADVGNTLVRDLGWDDIEINTANVKTNYDPLTSEHCYILMKWKAWENETFIVNNELTPAIFIWQILEKAFANKGYQLNSIFKTDPFNRLIIPMGLNLDADYIKDFVNLRASNPSPSSFVYSAGDYGTVDITFTDETTSPNFDTGGNYTGGVYTVPINALYEIAAELNVTLTASIGDINQFAELILFFEVNGNNVSTYDLTNETSLNDSILLEFLGDLVANDTVKLRLRYENVTFSLNIAGSLSVVAEKEGLETGETVNLQYIIPISWYVRDIISDLTTVFNLAWETDVLNRQVYAYPKDDYTIRYRANSTGAASLTSFDGFFKGSNKYDLNTRDVDGSDFQVLDGYKSSQVLAYATDDDTTNKEEERRGVNIYSGGYNFPQDRFENGIEFIYTKFFAKAIHINDVAITTGGTYGAQMPLVFGDDYNTVTDAEPNYNLAPRLLYYAGRRNGLDGYIRLYDETSSASSAFDFPAAFMVNYNDPSGADFNLSFSDEVTNYTNVMQGVFKTFHLQTYKRIELGKVYTTFAKWKPKDITQLSFRRKGIIGSSNFIIQSLEYNPKSNSPAKTVLLYDEKPNENDLTKVVNTITLAGASPQSGTVTGSGSGLVGANGATVNIQLSYTPFLNSMTNVLVLAPNSGITQVSNTNANVLVFMNGQKLIPTVQYIIGGSTIGINVNTHYDGANYEVVVNGVTKG
Ga0335036_0000624_26966_27847	F034112	AGAAG	MVIFNIGNKAIKYNYPETAADITLEQYIYFSKFLLPEHPKVELEAIQYMNERDAVYQKILPYAKKLKVNTKNAEQIDLVYDLGKILQEQEVKDNVRRFLPPLIEKWNTLDKELESRLEIMDEVWEAKERYPYMAKVVNYFTGIPLDACFGKVADSLELKYLVFIYSKIMNAINTPAETKYKQLYDFNGKVYTLPERLMEKSTLLEFTMAAQYDKAMNQVKNGDPQGLLNIMAVLLKPLGEDYSDELFEQNKVDFLQMSLQTSYEVAFFLTKLSERYTLDLQTSMLQRAMENLN
Ga0335036_0000624_27847_28143	F031407	N/A	MTDKEKALIIIDLIEKITQEIIDKPMQRKKYLQMRGHLEKAVKLTGNGIKREWSRPPSLPIVSHAKAEPVPFVPTIKETNGDLLADNIPVITKKARRR
Ga0335036_0000624_541_795	F021732	N/A	MSITKYTVKCCLDKKLGHFVHVIFSSGFGLYGGNKPHHEDDNIEIHGWTFEPHDIDLSLYPVINTNNLIPLVDENEMDWVIIKN