NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0000413

Scaffold Ga0335036_0000413


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0000413 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38204
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (26.79%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005050Metagenome / Metatranscriptome413Y
F008936Metagenome325Y
F024730Metagenome / Metatranscriptome204Y
F030677Metagenome184Y
F080936Metagenome114Y
F094990Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0000413_17455_17994F005050N/AMACVSYCDSSLLDHNLVNCNEYKLGGVSAILVGACGTELVNPSDEVEVEALITAGTAKLIEDIRFALPAGSPVTVDSPIGCGTPIRINEDRTATLYDANVTDENNTFWNDVNNRRIAWVLAFMCDSGKVIYINPPVGITTSANFILPEQNNELQRYEVTFSWRDKNIPAQYDAPAGIFG
Ga0335036_0000413_21432_22343F008936AGGAMASFDSLVRDKIKLFESVPDKLATAAIKTQADIWRKIRPILDDMDVSAAGNIEQTEGNIRRIGLIADELKKVLAGSEYKEAVRAFLGSIDEGVQLTNEIARTFESAFEPTEVQKQLLQISKQNAINTFFGAGLDARFTQPFLEQLTTNIAARAPLREAVVALEGLVTGTEANDGRLLANIKTTATTAQAVADRSYSAAVNDELGIEWFEYLGGEISTTRPFCENREGGIYHRKEIEAWGAGKNSAGINDIRDGTWAGRIDGTDSKSIFTLVGGWNCRHYLVPVPERKVPDTVKARARAEGFID
Ga0335036_0000413_25100_26137F024730N/AMCIESLLGLRDCESPEPSTGLYIDDLGINQTFLGQLITDQYRNGVELFEDKRAFAWRKLSSDVLTKLSPMMKSDTIIESKRVGQVVSNYANVQTALGAGNYGGIRLKIDPNTVSYLNFYLADINLAIDSANVNVPVLIFDMTTGKLIETITYAEGALDQFIGKTFTSAKRKMDIAIVYESDINTVKFTPKRGTCTSCGGGIKESHICPFVDAIGIELTTDGTNVLTSKSSKYTTGMSLTYNVNCDRQGWLCSVGGTMALALAYATAVEIYNYALTISPNQRVNTTVIVNRGQNKAELMDGIMAARDIAATRYSEDLGATLQNMRLPDDTHCWDCRKNMKYVTALP
Ga0335036_0000413_26139_26714F030677N/AMPTPAEIQKNLDSLYEGWTSKFTALYGPVRELKRIMFKRIFGTGSTGGTNTAGDKLPSVPYKTTPIYVSPRTLASAPSRFKVGKLGEPIKSLYFPDGYAQLKQETSRKLPLELTGRLKGGFLSQEVITEGLTAGIGLPDSEKEKAQGLQFGNGKRFKGYGPIFQPTAEEQAEMLEDHAAELVQQIINAMNK
Ga0335036_0000413_32347_32991F080936N/AMQQSNISTLSLFAICLFLLLLLLRTCGALGEAESNAMYLDSLNNEYAVRIARDSTLMYSQGVQLAAAGTKLRALELKEPEVVIRYQTRTKVVTQVELGETVYIDSFPHLRLPRTFHRPGKWLEIGGQINRLGRLQLDSIIIPVSYTVAIGDTLRKGFLSRKRDKVVRLGIDNPYVHVTGMNNIIVAQPPKKWYETRAFAFALGGLVGVAIGRAK
Ga0335036_0000413_34398_35021F094990N/AMNSIAKITIPIEKLYQSINSTETLNAQRLTANIQPIESPNQYTAASNAIAQVNAAVKAIQDARKMVTGPLDAYKKELMRIESDATEPLQAFIASTKAEMLKYTAELNRKQQEEQKRIQEQSRSMADLTDQLADVSIQHSHIKGIRTIRRTRITGEVDWMKVLSVLFGSGMYKPEDLTQNLLKAMEKCGVTAIAGIEIYEEQIQTITR

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