Scaffold Ga0335036_0000413

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0000413
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38204
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (26.79%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005050	Metagenome / Metatranscriptome	413	Y
F008936	Metagenome	325	Y
F024730	Metagenome / Metatranscriptome	204	Y
F030677	Metagenome	184	Y
F080936	Metagenome	114	Y
F094990	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0000413_17455_17994	F005050	N/A	MACVSYCDSSLLDHNLVNCNEYKLGGVSAILVGACGTELVNPSDEVEVEALITAGTAKLIEDIRFALPAGSPVTVDSPIGCGTPIRINEDRTATLYDANVTDENNTFWNDVNNRRIAWVLAFMCDSGKVIYINPPVGITTSANFILPEQNNELQRYEVTFSWRDKNIPAQYDAPAGIFG
Ga0335036_0000413_21432_22343	F008936	AGGA	MASFDSLVRDKIKLFESVPDKLATAAIKTQADIWRKIRPILDDMDVSAAGNIEQTEGNIRRIGLIADELKKVLAGSEYKEAVRAFLGSIDEGVQLTNEIARTFESAFEPTEVQKQLLQISKQNAINTFFGAGLDARFTQPFLEQLTTNIAARAPLREAVVALEGLVTGTEANDGRLLANIKTTATTAQAVADRSYSAAVNDELGIEWFEYLGGEISTTRPFCENREGGIYHRKEIEAWGAGKNSAGINDIRDGTWAGRIDGTDSKSIFTLVGGWNCRHYLVPVPERKVPDTVKARARAEGFID
Ga0335036_0000413_25100_26137	F024730	N/A	MCIESLLGLRDCESPEPSTGLYIDDLGINQTFLGQLITDQYRNGVELFEDKRAFAWRKLSSDVLTKLSPMMKSDTIIESKRVGQVVSNYANVQTALGAGNYGGIRLKIDPNTVSYLNFYLADINLAIDSANVNVPVLIFDMTTGKLIETITYAEGALDQFIGKTFTSAKRKMDIAIVYESDINTVKFTPKRGTCTSCGGGIKESHICPFVDAIGIELTTDGTNVLTSKSSKYTTGMSLTYNVNCDRQGWLCSVGGTMALALAYATAVEIYNYALTISPNQRVNTTVIVNRGQNKAELMDGIMAARDIAATRYSEDLGATLQNMRLPDDTHCWDCRKNMKYVTALP
Ga0335036_0000413_26139_26714	F030677	N/A	MPTPAEIQKNLDSLYEGWTSKFTALYGPVRELKRIMFKRIFGTGSTGGTNTAGDKLPSVPYKTTPIYVSPRTLASAPSRFKVGKLGEPIKSLYFPDGYAQLKQETSRKLPLELTGRLKGGFLSQEVITEGLTAGIGLPDSEKEKAQGLQFGNGKRFKGYGPIFQPTAEEQAEMLEDHAAELVQQIINAMNK
Ga0335036_0000413_32347_32991	F080936	N/A	MQQSNISTLSLFAICLFLLLLLLRTCGALGEAESNAMYLDSLNNEYAVRIARDSTLMYSQGVQLAAAGTKLRALELKEPEVVIRYQTRTKVVTQVELGETVYIDSFPHLRLPRTFHRPGKWLEIGGQINRLGRLQLDSIIIPVSYTVAIGDTLRKGFLSRKRDKVVRLGIDNPYVHVTGMNNIIVAQPPKKWYETRAFAFALGGLVGVAIGRAK
Ga0335036_0000413_34398_35021	F094990	N/A	MNSIAKITIPIEKLYQSINSTETLNAQRLTANIQPIESPNQYTAASNAIAQVNAAVKAIQDARKMVTGPLDAYKKELMRIESDATEPLQAFIASTKAEMLKYTAELNRKQQEEQKRIQEQSRSMADLTDQLADVSIQHSHIKGIRTIRRTRITGEVDWMKVLSVLFGSGMYKPEDLTQNLLKAMEKCGVTAIAGIEIYEEQIQTITR