NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0000341

Scaffold Ga0335036_0000341


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0000341 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41569
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (45.16%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014004Metagenome / Metatranscriptome266Y
F020889Metagenome / Metatranscriptome221Y
F022640Metagenome / Metatranscriptome213Y
F036765Metagenome / Metatranscriptome169Y
F099203Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0000341_32294_32434F022640N/AMRIAFLIATLALGLRFGLAAHATVSDYQERQADQFCQVDPNYCNAK
Ga0335036_0000341_32693_33016F020889N/AMKNNATQMTLFRQGWKAEVYFGSELNAHHMNTRSVYSFKENGNVSITHSAKYVEDGSVDVFAVSIREEINPRHSVTRTVETFDNWLDAYYCGVQCVNNLNLDAIIIN
Ga0335036_0000341_35765_36064F099203N/AMLRQTTAMSNFICITFGPRNDEPNMFWNERTWWDTQRSAERWGIQSMPIAGCFGYVVIEEGEDWWDVVDELGAPANAVSISCDRLGTFSVQPAPQLQLV
Ga0335036_0000341_36551_36874F036765GAGGMTIKATELLKLFAKADKLQLNVVVREDKDGDYVVRIYEMFCQEGFDEKVVITQKAESDWNKGAYSFDAMMDVLDGMLEEKLLEEIKAQKRKELIESLTPEQRELLGV
Ga0335036_0000341_38928_39164F014004N/AMKTLTLQVTEVSFDFDDLDFTAEQQQEVVDSVVGNVFEVKVDDDDDDEAIADVLVEEVSDYTGWCVFSLDFVHILNTH
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