Scaffold Ga0335036_0000337

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0000337
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41819
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (88.71%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008296	Metagenome	335	Y
F009064	Metagenome / Metatranscriptome	323	Y
F010232	Metagenome / Metatranscriptome	306	Y
F022871	Metagenome	212	Y
F053779	Metagenome / Metatranscriptome	140	Y
F058945	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0000337_26736_26897	F010232	GAGG	MRSREELLKIKEAFAYAMIDMLDVYDELLATGRVYVDEPTINDLAKNQEESNA
Ga0335036_0000337_29907_30359	F053779	AGGAG	MYYSEVDGAEPTVSIQVSGTKYTFTNESLTRLIEEKENLKVEVAQAERKVKSMGWDVREFFESRKEGNNINEDICCSVEDINELLRGLGVDQLTTTWSATIFITATITGIDAPDKETAEEMAKDNIDVNYNDDGDIWVDDIEVQSVHPEA
Ga0335036_0000337_33683_33994	F022871	AGGAG	MSELKNVWDSNDDFWNFIGDNKKLVGIAISGNQGLDILNALRDIYLTIQEEPQDALKMLTLLGTVIYASSIGEGKEFADEIQIVSAMEQFDTSMKEMLDEKPK
Ga0335036_0000337_34263_34931	F008296	AGG	MNQEWVQEYDLLVSTLGMEYSKKYSIVEPSDIKQILWMWFVTHPKKYKEWSELPPKDKEKLIAKSLRNAALAYCEKEKARKFGYDMADLYYYDPSVIEAFLPSILADSYEIPTKIKDLNFQFGKSGEVTDGNNWLVLRSDIEKAFNQLAEAKQNILRLRFTTENCEWSELGKELDTSADGARKRVERAINSLVRILGGWRTFNDTDVVPDKNEDEEADDSGT
Ga0335036_0000337_35580_36077	F009064	N/A	MIVNLSKDEVRVCTLLAIERWLTKFGSKDKPNYAQGKLDGKLEPEINANIRANVCEWAVAKQYNLGWNTPWYPNALHAKRYPISDVGNNIEVRSIRTQTSIPFWAKDKSRIIIGTKCLDIEYYSEVEIFGYIKPEQFTKEEYYDSYINGWRVPITEFREYDVKTI
Ga0335036_0000337_9278_9727	F058945	AGTAGG	MECDHKSKVLDWAYELKDGQMNQYVSLYGCTECDATSPKPFPSKEEVITIDHSNCHIDPCFGCKAKGLQLSTGDANGRAAMPRRKWEGELEAYRNARRQGIQPAGTTMEKIVAAEKASENLGRAYNAEKDPNAKQINKKTAKVMTEIGA