Scaffold Ga0335036_0000316

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0000316
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43219
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (78.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011388	Metagenome	291	Y
F026257	Metagenome	198	Y
F042878	Metagenome	157	N
F050332	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0000316_12478_13773	F011388	N/A	MAMAVVCFHHALYKLGLPNPKYGDPKSHLAWLDSPYDWFHIGIQQETAELVFREIETILTGQHPAQKGRGCPMVTELGKIVETTKKYRGEYPWIKFNPIVGGASIHFRTTQDRAKALLGKDMNGISFDEAAFEPHLLMIYQEVLNLRRLSTGGPLHFIGTPTEGFNEYADLWEKGNPDNPARDNKFISFRLSTRDNIGYGLTQENFDDVVRQQAEYLIPQNIDGFFIEARDAFFWSQSIQAVFKSGVAELGPTRHHKYVQGVDPGISHDATWAITLDITDRKLLRGTRIRKRGGKQSISAVVNMVREGHLLYQQDGAYCTTIVDSTGLGGRLFQQEFSIIRPLRGFDFGGTKAKKVELLNDLKAVLDKGQIELPTGGAWDEMRRQLLTYKLDDKKLEQDAVMALAIAVRHALRNPEKPVNDPVFTYFGVSD
Ga0335036_0000316_33598_34014	F050332	GGAG	MTENKRGPQVAVDVWLSDKKEPKEKTFQSGTTAIEFFASRSTEEYTTWRALPREGKPEAPENKYVYVTLTVFDKKTQEHLYKIYYKVQEARAKNPNEKRPNLHVTGELRNARVYEGKSYEDITVRDCSPLIWTPAEQA
Ga0335036_0000316_36162_36527	F042878	GGAG	MKNTPKTQDFEQYFTTLYDEAKSILVERQRQYGPANIESLGVPGVFSRMSDDKMSRVKKALNGSVVKGRVVLSDASLAELQHPSVRDALIDSANYALILLSLIDGQWSHLQIDYENPDAG
Ga0335036_0000316_8467_8904	F026257	N/A	LVEAINKKMRDGMSDVQLSKWLADAGHYISRITLGKHKREHLTEDHEHKRISAINHLRKQKKTIKATGDLAMLVRDYVHSAVQDGDLTPSLAEGLRAQEMIDRRQEKGADREVALQLAGILGGGATYQIIEATEIKPLGVGESES