Scaffold Ga0335036

Basic Information
Taxon OID	3300034106 Open in IMG/M
Scaffold ID	Ga0335036_0000219 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034106 Open in IMG/M

Scaffold ID

Ga0335036_0000219 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	50997
Total Scaffold Genes	72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (48.61%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

50997

Total Scaffold Genes

72 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (48.61%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003687	Metagenome / Metatranscriptome	473	Y
F012964	Metagenome	275	Y
F018836	Metagenome / Metatranscriptome	233	Y
F027508	Metagenome / Metatranscriptome	194	Y
F035274	Metagenome	172	Y
F101071	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0000219_1281_1520	F003687	N/A	MNYQAVEQLLTQDARLLARRDSPAIDQEIEEQRQAALQLFFQWQDGLAQFQDLVPFCVILQHKVDLNRDLLRWERRHED
Ga0335036_0000219_13780_13959	F027508	N/A	MTNALTDTGTDTATNFDLGNFEKLLERLEASKGRQQRQKSVEGRRDIFQQGLASMMSNF
Ga0335036_0000219_13980_14234	F018836	GAGG	MTTLPPGQVNTTTEDDPFDIDKYRQAAEVAYSFSKKKLEDAGTQERETIGKGASEQRTSAEQSQQFKDTEEARDYNQAQRGYRY
Ga0335036_0000219_35805_36404	F101071	N/A	MTEKGIRGVSARVEGAELITNADLVHAANELLGGIDLDVASSKVANEYVQATEYYTPLDDGLNSQQWYGSCYLFPPAGSYFWDQKNQRWKMTRASSLTLTSSHAVWFRRMYHAWLADEIEQGLYFSNCPDMIRYEPKIFKFPMCVLRTVPYLLRNLDGKVEKKQTCTSFLVYLPPKDRSGDAVESFCKIYGERGHLLVD
Ga0335036_0000219_37702_37998	F012964	N/A	MEEQIPPSQYPNQQTLEGQITPEALAEMKARAMELAIQQTAPYRTSVEMPPQVVYVRRNLTVAELLLVLLLSCGIVTGIQGLWYLGTNLLPRLEVRVR
Ga0335036_0000219_933_1208	F035274	N/A	MSLTVGKEELDSALAVFKIEHYHLEFDGNTVYIQWVATTPQAREYIDAFLECLDVLIDERWVDTYGSHERGVDVCLPDEDYICCRYILETV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335036_0000219

Overview

Ecosystem & Geography

Associated Families

Sequences