Scaffold Ga0335035_0100883

Overview

Basic Information

• Taxon OID: 3300034105
• Scaffold ID: Ga0335035_0100883
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1859
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051912	Metagenome / Metatranscriptome	143	N
F073545	Metagenome	120	Y
F079619	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335035_0100883_1006_1383	F079619	N/A	MEEINIQEWDNLQPDPISDKTKVELALIDLYNRLAMQVPTNHQEILDELAERLLSQEASLTVKQVAGSLDASVSETKLRVEANSPYNDGWTKEFYEKELQKVTEKRDQDYMYNWIREKSGRVKLD
Ga0335035_0100883_279_482	F073545	N/A	MIPTPEQKAVELYNKYFDLGRDFTRGVSMREFAKECALVCCDEVLGYMGADRGHQYWTEVKAEIQKL
Ga0335035_0100883_479_694	F051912	N/A	MTEKEKAESLVDEFYQYTNTNSRENAKSCARILAKEVIVKLKYNKVMSVIVEYWEDVLLEIDRIPAFKDEL