Scaffold Ga0335035

Basic Information
Taxon OID	3300034105 Open in IMG/M
Scaffold ID	Ga0335035_0018576 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034105 Open in IMG/M

Scaffold ID

Ga0335035_0018576 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4652
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4652

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013879	Metagenome / Metatranscriptome	267	N
F023575	Metagenome / Metatranscriptome	209	Y
F055672	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335035_0018576_2191_2670	F023575	N/A	MAQSKGLALVYGSKGTIQLFNQTGVLTTPPPPLTGAISTIESYDVTHEADVEQIKNSAGNVIAQIAANERISLNVTFIPSSSVDAATALTCASMPNVNGYATIAGADATTYGGITINGDYIYSGGGSVKFTSSGKAMVTITLTKYPAGGLAGTATVYTL
Ga0335035_0018576_2683_3168	F010835	AGGA	MNAVALRTERALVDWLSAEDWSESPIGTPTCLTSYGHGAFADQDLEDQMPSFPRIVVRASTATPVHPIDRTCEIDITATLQLSADDTSEVQALAVVQIFENLLQYLYVDGNIAELDTLDTDPSGGFNAQFAVPVDFGINDISERARTFSRSMTIFAAANSI
Ga0335035_0018576_3165_3947	F013879	N/A	MTPTVTVDTSRFDAAWKEYLPKTKRSLADAVNARTFFLMLRLYCLLPPKSPQAARNKILDYFNRPVGADRFDKKTGKRVGKSRQLRVVHLIAQAKNAKAGKPGLYGADMRKAAGALRRRAAGSVGYLKSCVTKAIKKLSPSFQQFGGTRRAKKGSAGVKSVAGNAALINLANQYGLPQENVAMHKGSSAYAYNAKSGFNPSSHVRLNIGLADNQVGTVEGIYSKAMQQAYNDEARELENHIAAALQAAFDGSESKGITVT
Ga0335035_0018576_3944_4345	F007260	GAG	MGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQARVLVKFSDWRLADSTLVTVDAAVWSCDVGANADRLLQESGSFLLQENTDRLLLTFGKMLPVVGRLLTYDGRQMRIMSAKRDGSGAYYALELGSKTK
Ga0335035_0018576_4396_4650	F055672	N/A	INSLLGSPTGNLRISLPDPVLYEAAFAVWLTNGTNQAKTSIIARAITGTSYCEISHFENGDASSLANHVKATSRLIVSGTYFTS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335035_0018576

Overview

Ecosystem & Geography

Associated Families

Sequences