Scaffold Ga0335035_0016226

Overview

Basic Information

• Taxon OID: 3300034105
• Scaffold ID: Ga0335035_0016226
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4977
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F027417	Metagenome	194	Y
F053900	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335035_0016226_2288_2560	F027417	GGAG	MSYDYRVTFVTDYLTITTNVCLELDDTTGNLSDEAYEQATINGMNNIEDEIGKIDETVINDITVTLLLDDEEIELGNFGEFPPVHVEVIE
Ga0335035_0016226_2893_3051	F000821	AGGAGG	MNREYLEAKVDLCLNQAEIDIKQQEIARAIKNLERANSALSRIFNLEEDENE
Ga0335035_0016226_4635_4976	F053900	N/A	SATLGQLLPFVIASVIDGTVLEQAQEMIKDGQPKGSSSPAEGGNLLANLIDIKNGFLKLDQEDQTLLRLRHHESFTLQQIAQFLECAVSTADRRCDKSLRRLQDNLGGISPWQ