NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335035_0011941

Scaffold Ga0335035_0011941


Overview

Basic Information
Taxon OID3300034105 Open in IMG/M
Scaffold IDGa0335035_0011941 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5807
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004599Metagenome / Metatranscriptome431N
F006539Metagenome / Metatranscriptome370Y
F006788Metagenome / Metatranscriptome364Y
F042333Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0335035_0011941_1310_1960F004599GGAGMMAFNLADYEDVATLNKWFISNFPSGRSDISVISHDAVNGYILVQATLWRDSKDTSPAVSNVAFGARESYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMKKVNDEPIKNIYGRSGNSQVIEMALRKSFADDATPTSEPTTWSVGDVAEALSTKPKQQECTHGLMILKEGTAKTGKPYFGYVCSAPKGEQCNAKWAVTAANGSWFFREEE
Ga0335035_0011941_2227_2463F006539AGGMYAQIACVYVGSDMIETTTPWLWLYCMLGIVIGYGIVITIKENAFQSGYWKGRKDGYDMHRRITDTKRDKVFDYDKQN
Ga0335035_0011941_5490_5807F006788N/APAFQSITFPITNPELDNSDRDNLLGVFMGQPLNLQNLPEQISSGEFEGYVEGWSWSTRFNELFLTINLSPVAYSQVAMRWNTTPITEAWNTLSPTLTWEYATIVA
Ga0335035_0011941_737_922F042333GAGMDGYNAADGFRVYQCLKCCAIGTKNLAEAIDTQEPVIRCDQCGAWQFTDQQCHTCALIGA
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