Scaffold Ga0335031_0609165

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0609165
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 643
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Comamonas → unclassified Comamonas → Comamonas sp. B21-038 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002764	Metagenome	531	Y
F011742	Metagenome	287	N
F036230	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0609165_203_424	F002764	AGGA	MKEPEDEAFDELAKRQGDWGLQGSRKHQIIRFAENNARNEVIEEVAKELDKFAGAFGRDTVQSFAAYVRGMKK
Ga0335031_0609165_3_206	F036230	GAGG	MNEIAIGDIVQVTPDKEMFGACMVVVTELKSWGIQGYVQSAGIPGQQYIRLKFDEYEPTGGKAVWVVG
Ga0335031_0609165_411_641	F011742	N/A	WEDDDFNPEIDRIEVDYQWHEADDSVGLIAYCEKTVKWMRFNLEIKDITDELSYADLAYLKHEIQRNDKEIADERT