Scaffold Ga0335031_0217739

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0217739
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1284
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F026864	Metagenome	196	Y
F068766	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0217739_286_540	F068766	AGGAGG	MTTDNVVGFHPKNKLVNFYEIATEEGNAVWGGEDPHSAVQWLRQSPLNSRLLVSCWEAGEEDARLIIEPIDITKIVHAVLAGVQ
Ga0335031_0217739_699_854	F003212	AGGAGG	VKDKWLVTIEIETYDGDPKAWDWDILLGNEDVSKVISSEFKGRVLKEETNV
Ga0335031_0217739_844_1086	F026864	AGGAG	MSEQEKMAQFVFTVVIAPANKSFDVELWDFAGEEPKRLSTGSGSNWRTALGEALSKIQLPTDKVEKTINDLVKEEEESEG