Scaffold Ga0335031_0125166

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0125166
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1795
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015970	Metagenome / Metatranscriptome	250	Y
F042184	Metagenome	158	Y
F061577	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0125166_1_234	F015970	AGGAG	MTAFNKAVWESYQQLNDDDIMDAIQGSVAIPLAIKSGDWEYAFAFIKERIDNKMTRRAEFALYNIIKTSLIDDDDELR
Ga0335031_0125166_221_448	F042184	AGG	MELDIDFCDLEIDIKAWVEWEDDPDYSPDEGLYNKFNWVVYLQVGNNRIDITDELSAKECKQIEKQIEESIDDSF
Ga0335031_0125166_566_730	F061577	N/A	MPRPKTEMTKSGKTIAVRATLTEWNEFKRLGGAKWLRPFLAKSIEKHQKTKETK