NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0109626

Scaffold Ga0335031_0109626


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0109626 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1941
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008296Metagenome335Y
F029029Metagenome / Metatranscriptome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0109626_1023_1688F008296AGGMSEEWVQEYDLLVSSLASEYSRKYPMLEAADIRQMLWLWFVTHPIKYTEWSKLPDKDKEKLIAKSLRNAALKYCEKEKSAKSGYDMSDLYYYDSSVVEAFLPSILADSYEIPTKIKDLNFQFGKTGEVTDGTNWLVLRSDIEKAYNKLAEAKQNILRLKFTTDNSEWNELAKELNTSADGARKRVERAVNSLVKILGGWRPYNDVDMIAAENEDDDDRTES
Ga0335031_0109626_1669_1911F029029GAGGMTEQNPKDISSLFKKDYSNAMDLRGNPIGNICVCGSELFTAIVGFDAGEISFYFLDGECVDCGSLVTLPTPIDDIGMDCD
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