NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0101830

Scaffold Ga0335031_0101830


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0101830 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2024
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012105Metagenome283N
F036604Metagenome169Y
F041721Metagenome159N

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0101830_1063_1554F036604AGGAGGMSLIQTPEQLADAIVTDPERVAACLGRINRFGGQVPNCTVLRHSLHVFERVDADPTASDRARLWALLHDCHEVLTGDVVRPYVTARLRMDQDEIDAAIVRRLPMRVPQPGSMSWESVVAADRAVGEFEILQIQQGRAPYELYTFAVASWARLVRGFIERRAGT
Ga0335031_0101830_45_632F012105GGAGGMIPLAIRRHSLQDLTLGQSVMLTVPDCEERQIRRAMGVVNAGRSDGLRLKTLRTPNGLRVWLVESVEVADSPEWKTGKSRRFPGRDVVAVQKSVVKLNEWARVLRRPYRFRVVVRGGVPVVLKLPKNKTIRIRREAELLRVVKAVERLRAGQGTVVRGVERCDIIRAKWRMKKRGIRFVVRCIGESVWNVERVSE
Ga0335031_0101830_629_1066F041721GGAGGMSDSQLESLRAFAARERGHLLEHCPPIPVVPDWFLEVDRDGRITGQVISGACTSHVQYDPRFRAVFRHDCTFYSSGLGEWLHMVETFWRQTLRQWQSYRRLGEVLQAAEDCTPETHEERWRAVYECLGWNPDTAREQYLERRAKR
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