Scaffold Ga0335031_0084505

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0084505
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2252
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042325	Metagenome	158	Y
F049619	Metagenome / Metatranscriptome	146	Y
F084236	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0084505_1752_2084	F084236	GGA	MLTIKNQYKLVAESFVVSKNGTNEHWVVDDVDEKPNAYHIVVLRKLGIFDTIERTIRVNKEKNELGMYSVQIIQRGKIIDRDNIRLKNMKTSEGMLSELKSIMELIDIVC
Ga0335031_0084505_499_816	F049619	N/A	MLTIKNLNKLNHKTLGKKNFYVARIEEQVSIDNISLTASEHKYKFELSNKQYAITVTLDRTPAQYNALGTYFTLHSSTGHKLYISKNEISNIDIFIDKLRFVALG
Ga0335031_0084505_827_1150	F042325	N/A	MLTLENIQKIEGKKIHTPHAHWIVMGIEERKHDYIIKVRFEYGTTSGVKHPKYVNFKLLRYNEFSSTLNEWKMYNDQDNGYTILTKGYLQFKMFVGILGGQLHSFSN