Scaffold Ga0335031_0075840

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0075840
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2395
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004278	Metagenome	445	Y
F009805	Metagenome / Metatranscriptome	312	Y
F020160	Metagenome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0075840_1029_1217	F009805	N/A	MDITVGMGEWMNSLMSRMSSAMDGDCFYLPTAMHLHAYTILKEGSFPDKNFKVAIQETQVPQ
Ga0335031_0075840_1300_1446	F020160	N/A	MECRKRLAWTIACERAVVTKEDAVEIYNKIIKEFNDIDKRKQYKERVQ
Ga0335031_0075840_1433_1717	F004278	GAG	MIQILFRDIIQAVIKWWKKVWFEAKLKARLDMIEFENRIQSELEREEQNKPIYREYPINTELQTGESQKLGGEMRLTAPWYTDEPRPPQSDGMP