Scaffold Ga0335031_0065534

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0065534
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2599
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006017	Metagenome / Metatranscriptome	383	N
F006467	Metagenome / Metatranscriptome	372	Y
F027501	Metagenome / Metatranscriptome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0065534_1542_1712	F006467	AGGA	MIKRIILDLIGGAWTVLGLLFAVVVLPEGGTQTTMATLFVLLTLGWLITGPLRWKE
Ga0335031_0065534_1714_2322	F006017	AGGA	MKFKVKSQLDHVEKGGILDDCGPSSTAAAVAWASGYKVDPSAGDGIKAKAKATGFVEKEGVSDNGSSLGDLIKTAKEMGAKARYAKSWDDVVISAHRGAGLIIWVQQAVDYPAVEISEWHKKWQNYWLKKDKKHITQGYGHMTAAAWHAVDGWQWACPTRKGKGNEKFGVVVTEEQLKQIAASKKKITGGAAHKHVVIVEWK
Ga0335031_0065534_2332_2598	F027501	AGGAG	MYSDIKAGIRWIIDNTGVDEALIEFFRTFVTVSISVALGLGIPLLDISGGDFRTVLSAGLASGLQVLIKFLDPKNTSFGIKEKSPEDKA