Scaffold Ga0335031_0057830

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0057830
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2784
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F013755	Metagenome / Metatranscriptome	268	Y
F016253	Metagenome / Metatranscriptome	248	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0057830_1654_1863	F013755	AGGAG	VNNHIGDGNKMVSDTPISDSTPHNVADLAMLCRRFERFAAGRQARIDQLETENDAMRADLLLWNEKESK
Ga0335031_0057830_1860_2060	F001259	AGGAG	MKDSPAFIYIHAFNGLIRVESLHTAKHVDQSPEWKHVATINPHVVLESILRATIKERNQIIKHILT
Ga0335031_0057830_865_1020	F016253	GGAGG	MSDKIKSFIDSGTGVYSITKKEAGEIHKAAKKVKNYAFSYWTRNRKAKESK