Scaffold Ga0335031_0046681

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0046681
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3126
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005697	Metagenome / Metatranscriptome	392	Y
F009503	Metagenome / Metatranscriptome	317	Y
F021065	Metagenome / Metatranscriptome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0046681_1082_1570	F021065	N/A	MRITLTKEEEFICHEAAIQLAKANTDYWPTRETNYSKDKSLHDLIAQDAESVGSEWVVAKYLGLPFDPFEQKGKFKADVGHHFEVRWTKYEGGQLIVHEYDRPNDVAILVTGKSPRYVIAGWIPIAMAQKPRYRSSTQPNWWVTQINLQPIENLRKTTYGQN
Ga0335031_0046681_1755_2384	F005697	AGGAG	MGFLDNYEASRERLERWIKTYPTGRIETRIVEFSAEKGYVLIEAKAFRNHDDVSPAGIDYAYGYQAAYQPNMRRWFVEDSVTSAIMRVQQLVMGGAERTTKEVMEQVERAAAVKPQPEAQPDYWTTKFEDHKPIATPLASSLGEIAKQLGGELVAEAPMCAHGHMVWKQSHDGAPKSWGGYFCTQRSKATQCPPRWHVLASDGKWKPQL
Ga0335031_0046681_934_1095	F009503	GAGG	MDKTEFECRKCKKITVQLIHKVTDNLPPGVEVIQCTKCEVMGVAQIGVSNADL