Scaffold Ga0335031_0039541

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0039541
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3424
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040536	Metagenome	161	N
F041090	Metagenome	160	Y
F055552	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0039541_1286_1516	F055552	GGAG	MNLEYWQAKANLCRQVGIEQLMAGDIKNGNRNLKRMVRAMEEINLIKAGEDKSAEDMWASLITNGLLLAGEGESNE
Ga0335031_0039541_1793_2053	F040536	GAGG	MDKMGKLIAFHPVKSGLKLFYEVIEPDGETRWGGERAFDAISWLHLAPRGSRLLVSGWESDDLDAQPVGQPLDITEIYEMVKGESK
Ga0335031_0039541_2410_2703	F041090	AGAAGG	MKNETTNKLQGNIVKLSVMRSERRLASSPYGPVSQGLTTSQRIDRDQALTELLSSLESVVADLNSKSYTALDTLAIAIQGARVALSATTTERDGTDV