Scaffold Ga0335031_0033884

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335031_0033884

Scaffold Ga0335031_0033884

Overview

Basic Information
Taxon OID	3300034104 Open in IMG/M
Scaffold ID	Ga0335031_0033884 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3716
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035305	Metagenome	172	N
F090396	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0033884_1412_1936	F090396	N/A	MIGNNGGVHNELCRFKDKGEAMPLKIIELVPVSERLPALVKMYGNDKIAAVLSKSVTRALNNFNLRVAMTPEQITDLCYAILDEAEQDQLAIQDVLLFLDGMIKYKYGKVYDRMDMPTFFEMLEKYREERHLAFINGKDEAHAQFKAMGDSNRTSQDIDKEANRNAMQQYLRTK
Ga0335031_0033884_3204_3623	F035305	N/A	MNTLAIWEIAPSKSEIETLAQNVANELSEGTIKAEDVAVKISVMENFTKTLRAKSEEHIIDFLDKCPKGKYDHLGASLSLKDTQTYDYAAYSPRWAELQAQIDVLKAEQKEIEEEGKKFERGQIPLKSYKQSFVITLNK

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