Scaffold Ga0335031_0029132

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0029132
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4025
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072277	Metagenome	121	Y
F102814	Metagenome	101	N
F103142	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0029132_2331_2693	F103142	GAGG	MALDYKGFKWGERISADQDSVDRFLHEGLVPQSPSVGDLWSAAEWIATYGSENAEEAQGWANVVAFLMLTAEAKEKRSNLAKAKKKFAEANGIPVSQVRIKKEAEIIREGLALIPDKIDN
Ga0335031_0029132_2693_2830	F072277	AGGAG	MMEKCVKCGVAIEKMEVFPKGVCLACYAVEFEKEFQSALKIARFK
Ga0335031_0029132_3010_3531	F102814	AGGA	MAGTKPRDSQKQRLYDAQRLAGFYNTGEVMTIKEAQKFVNQVLSHQKTKKLHEQYRFQFSTYPSKIIVEAGGGNHATMRTRNWELVRLIRLTKAGRNKFIILHEIAHHITWGRESHGAEFADVLLQFTTRYLGKPDADKLANAFNEKRVRVMTKAKKARVPRKREIVSARLVA