Scaffold Ga0335031_0028700

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0028700
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4058
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048668	Metagenome	148	Y
F069436	Metagenome	124	Y
F075836	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0028700_2016_2297	F048668	N/A	MRYFRALPAVYVSICGQLDAAYGYPNAETKTDRTLPLVADLPTDAAGRVYLAVDAAYCDFILPGQMLPDLIASGAVEEITVADYAAVVPAERR
Ga0335031_0028700_3028_3306	F069436	AGGAGG	VTDEAKHTMLGLLDRWGWPTVAAVGLAFFIRQDLLLPLLEEHRLTLKEVRETQREIADAVNEQTRLLIAIQSGKPAPQMRTVDVTEPGDGRN
Ga0335031_0028700_3659_3922	F075836	GAGG	MLIALAGCVATLPDDSTISADLACETARAVVLERARPDVPDDKPKPGDKCPNCEGRGYVGDGTVKVKCQPCNGGGKVLACPDGRCQK