Scaffold Ga0335031_0020779

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0020779
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4813
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F046686	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0020779_1219_1470	F001477	AGGAGG	MSNVYTIHPPKSDLILFYEVVEPDGSNTWGGASSADAMQWLYLAPDRSRLLVSAWDSDEEDAHLVGQTIDITEIIQEARKVGL
Ga0335031_0020779_1463_1621	F000821	AGGAG	MNKEYLEAKVDLCLNQAEKNLQEEEIARAIANLRRANSALSQLFGFEEEENE
Ga0335031_0020779_572_769	F046686	GGA	VKAGLTISQTTQNQQLSELLSSLENVVESLNYKSFTVYDTLVIATEGVRAALSDIVTDEAGTDTI