NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0020403

Scaffold Ga0335031_0020403


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0020403 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4860
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001883Metagenome / Metatranscriptome622Y
F016965Metagenome / Metatranscriptome243Y
F033725Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0020403_1509_2057F033725N/AMITILNKEIPNQLEELTIEQFEVITEINNNQELDPIDKHLQVFAYLGIPESEFWDYDVADFVGMVKEFNSAERKEYPVVEELEIDGYIYKAQMKLTVRDTKMIEKVALRKEKGYISEMLAIMFKREDLTPTEHYTDAHIKQKAKLIRKLNAAISIPYMMFIANKIGQQANDQASEAVEPSNS
Ga0335031_0020403_232_375F016965N/AMFNINGIEYTITGPIEMVSDTQLHVETDKGIILVDDTMEIYKELING
Ga0335031_0020403_368_820F001883N/AMARYANTGEFNVLYPTRRKMATILKRIIRNDVVDGEGTLVESIRINAKITGFQKLEIQIVAMYYFIFLNNGAFLWNGGVITPRDYVAQFTDELNAAGITAEIYRQYTEWLTKKYPLVEAVEVLEKQQKIVYTFEAVDPPAGFTPGFPLDV
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