NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0018676

Scaffold Ga0335031_0018676


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0018676 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5084
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007260Metagenome / Metatranscriptome354N
F013879Metagenome / Metatranscriptome267N
F017997Metagenome / Metatranscriptome237Y
F023575Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0018676_1382_1846F023575N/AMATSKGLALVYGAKGTITLKTPAGAALTSGAITTIESYDATHEADVEQIKNGSGEVVAQVSANERISLNVTFIPSASTFAQAKLAAGLPAVNGSATIASSDGVTIGGVSIDGDYVYSGGGSVKFTSSGKVMVTVTVTKYPSLAGNATVFDLTTA
Ga0335031_0018676_2341_3045F013879GAGLAEAINARTFFLLLRLYCLLPPKSPQAARNKILDYFNRPVGERRRDKKTGKLVGRSRELRVVHLIAQAKNKKAGKEGLYGEKMREAAASLRRRAAGSVGYLKSCVVKGIKKLSPSFTQFGGTRRARKGSAGVRSIAANQALLNLANQYGLPTENVSVHRGSSAYAYNAKAGISPHSHVRMNIGLADNQIGKVNSIYAKAMQQAYDDEAKELEIHIRAKMEEAAEVLEKHGVTVS
Ga0335031_0018676_3120_3521F007260GAGMGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQVRLLVKLADWRLADSTLVTVDASVWSCDVGSNADRLLQENGSLILQENTDRLLLTFGKMIPVVGRLVTYDGRQLRIMSARRDGSGAYYVLDLGAKTK
Ga0335031_0018676_4243_4383F017997AGAAGVNIIEQIVTALLKWLTGLAKTPPTVEDAKPDKELKEKLLDRIDRIG
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