Scaffold Ga0335031_0017784

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0017784
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5211
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011580	Metagenome	289	Y
F014489	Metagenome	262	N
F032957	Metagenome	178	Y
F047564	Metagenome	149	Y
F079815	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0017784_1_144	F079815	AGGA	MKTLDKKCLTKRYDGFIQDISAIQNDLVMLSHWIGEQQVKHSEYLKRS
Ga0335031_0017784_1595_1969	F014489	AGGAG	MELKQQHISILKRLAHGASSLKRFTDKDTEVGNQGFHYLRYLNDLQNFGLALEIDEVWHITGFGVAKLAEQTPRVSKDRVAAGTTTETYDGADLKQSGIREGAFDFLKYPSKFGDNLTYPRKYV
Ga0335031_0017784_183_374	F032957	AGGAG	MDDFNPTTRMFSRTLQEAFPKDYVNENIIEGAYYSAPHINDLPVLFGLIAVISMIAYALWRYF
Ga0335031_0017784_3102_3350	F047564	N/A	MKPTPTLIDSEKVIPCPYLSQLKPYTQQETFLEYLTNHYALMAMNPKTIEQSRWRAKELKADFPTLPTLIANRIKELKNEMP
Ga0335031_0017784_4787_4960	F011580	AGG	MTQTQALTKALILALIAPSDEKATQATDLAESIAQGLDFAQVEQCKADALAMTEGAQ