Scaffold Ga0335031_0014296

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0014296
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5833
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005697	Metagenome / Metatranscriptome	392	Y
F013485	Metagenome / Metatranscriptome	271	Y
F025683	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0014296_2134_2793	F005697	AGGCGG	MGFLDNYEASRERLERWLENFPLGRIETRIVEFSAEKGYVLVEAKAFRNHDDTLPAGIDYAHGYVGAYQQNMKRWFVEDTVTSAIMRVQQLVMGGAERSTKEIMEQVERTPAKVANAEKDYDYWTTKFGDVPSYKTAAEAEQSGIPSLGSSMDEIAKQLGGELVQEAPQCSHGHMIWKQSHEGAPKTWGGYFCTERTKATQCSPRWYVLRSTGKWEPQV
Ga0335031_0014296_2793_2966	F025683	GGAG	MVVDLLDAQTLGRLVLVIILMVISAAAGYAKGFKEGKREGIARRKAMVRHIANKAVK
Ga0335031_0014296_5321_5827	F013485	N/A	VGDVRNAITIKYGATSQNDVSDSDPASIALYGNLAQIITTTLHDAADANAQAAFYLSLRANPQPIFSQIRFDLTNPELDDADRDNLLNIFMGEAIALNNLPLNMSSGTFQGFVEGWTFQASYNQLSVTLLLSPLAYSLQAMRWNDVPITETWTSVSPTLDWENATIVA