NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0011291

Scaffold Ga0335031_0011291


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0011291 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6580
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030020Metagenome186Y
F100688Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0011291_2672_3157F030020N/AMRTLIFVLLLAGCNPVARISANATAIRNEAGALIDHGNATGDQVVVQGATRIDEHAAAIHGDIPNVQAVTPAWLSTLKWWGIAVAVVGIAFLAWNSGIGTFVRIAIGWLPRRKVAAAELAVSTLDPSRPEGDRELVAALRADPEFDAAFKRAKGRKQKGAT
Ga0335031_0011291_67_267F100688AGGAGGMSDPGDEHNDRDILERLDLYWPGMGDMALEERREAAREIRALRDEVRKLRAVLPHRISRILYEGEG
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