Scaffold Ga0335031_0010418

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0010418
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6865
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053996	Metagenome	140	Y
F074591	Metagenome / Metatranscriptome	119	Y
F086842	Metagenome	110	Y
F095177	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0010418_2352_2657	F053996	AGGAG	MRTASEQLIQTTWMAEHKLFQNHDAVTPVDWAKVWDVIDVLDNGEFDGNQLVMVAVLEFLCGSDSVEVSLDEIANLPELERSAVVEALRLKWSKVEFQENL
Ga0335031_0010418_3430_3771	F086842	AGGA	VNKADVGKVLAVAVAIDSRLGASDESAFRAKVEGWSLALSEAMDFEFARDAVGKHYKSSTDSIMPAHLNAMWTAHRSRQHEIDNVRAIGSSPRSQGMPDDVRAKLVELGLKRP
Ga0335031_0010418_5043_5165	F074591	AGGTGG	MTNWNWTPRAKIIGTILQAIAVVGIGYVLFVGIWFALGGN
Ga0335031_0010418_5165_5386	F095177	AGGTGG	MGFVPFSMERASLDEKHKIRKMLEYLGITHPAHQVEFMSALLGKTFDTTKMSRQDFMTLRSKIMNIQQTKDKA