Scaffold Ga0335031

Basic Information
Taxon OID	3300034104 Open in IMG/M
Scaffold ID	Ga0335031_0008412 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034104 Open in IMG/M

Scaffold ID

Ga0335031_0008412 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7624
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (12.50%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

7624

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (12.50%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002303	Metagenome / Metatranscriptome	573	Y
F010084	Metagenome	308	Y
F011392	Metagenome / Metatranscriptome	291	Y
F070108	Metagenome	123	N
F087190	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0008412_1232_1777	F011392	N/A	MNLSIKELNELIYSLGITASKGIMCDKELNVSLLNKLYDELTNRIAEEAIDEEVESDTYYVSNEEADEDYRSTLNQDSDRYESSVMNDYNVHLRKLKTRGYVSQALLDFVDKKGAVTHKELETYYKQITGSNSFSHVLQSLRTPYKNRKTQRYIAKEGKKYSNAKYIIKVANPSNWVIVN
Ga0335031_0008412_2_244	F087190	N/A	MNKKEVERLAELYFEKTVDLLGESKYHKHTPYLVIERSPESEGIDNEWHGEYIPEENEIVIYSDNITSKSDLAKTIVHEYA
Ga0335031_0008412_2776_3189	F010084	N/A	VDITEEVIKHLIFNIKTKLGVSPINGIGVFAIRDIKQYEEVFPIWNYESGIYLIPNDRLIEIPNEVLDLLDKYFINDECGYKVIRLFKGFNFLFHGFSYCNSAWPDNNKVNITNDGIAMMDIKAGEEILEWYHKNIN
Ga0335031_0008412_558_740	F070108	N/A	MLKKINMLFSLEEQLDIELILEEASAYGLRTEVEEYAQRYLNEGCTPVEAYQHAYYEWIK
Ga0335031_0008412_937_1209	F002303	N/A	MDIREKSRERAIQFAKEWNCENVSNHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLAMSRADTECRNNIFLLTMCNANCYADQLDYI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335031_0008412

Overview

Ecosystem & Geography

Associated Families

Sequences